Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0991724.35i.26a.6b with 2 members (Putative uncharacterized protein)

Bacteria / p__Proteobacteria / c__Gammaproteobacteria / o__Enterobacterales / f__Pasteurellaceae / s__Pasteurella multocida

Completeness score: 1.00

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This HOG has 44 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0991724	62	1661	Putative uncharacterized protein
2	HOG:E0991724.35i.26a.4a	50	28	Putative uncharacterized protein
3	HOG:E0991724.30d	36	28	Putative uncharacterized protein
4	HOG:E0991724.35i.26a.6b	30	25	Putative uncharacterized protein
5	HOG:E0991724.35i.26a.5b	22	13	Putative uncharacterized protein
6	HOG:E0991724.35k	18	78	Putative uncharacterized protein
7	HOG:E0991724.35k.33b	14	7	Putative uncharacterized protein
8	HOG:E0991724.28a	14	11	Putative uncharacterized protein
9	HOG:E0991724.35c	12	76	Putative uncharacterized protein
10	HOG:E0991724.32d	11	22	Putative uncharacterized protein
11	HOG:E0991724.35i.26a	10	279	Putative uncharacterized protein
12	HOG:E0991724.34d	10	7	Putative uncharacterized protein
13	HOG:E0991724.25e	10	7	Putative uncharacterized protein
14	HOG:E0991724.35i.26a.6b.3b	6	3	Putative uncharacterized protein
15	HOG:E0991724.29b	6	10	Putative uncharacterized protein
16	HOG:E0991724.35k.31a	4	2	Putative uncharacterized protein
17	HOG:E0991724.35i.26a.6a	4	182	Putative uncharacterized protein
18	HOG:E0991724.35i.26a.2b	4	2	Putative uncharacterized protein
19	HOG:E0991724.35i	4	307	Putative uncharacterized protein
20	HOG:E0991724.31b	4	2	Putative uncharacterized protein
21	HOG:E0991724.8b	2	1	Putative uncharacterized protein
22	HOG:E0991724.6c	2	1	Putative uncharacterized protein
23	HOG:E0991724.3b	2	1	Putative uncharacterized protein
24	HOG:E0991724.35k.30a	2	1	Putative uncharacterized protein
25	HOG:E0991724.35k.29a	2	1	Putative uncharacterized protein

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